ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR166
source: miRBase, original name: ppt-MIR166j (MI0005913)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGACCAGGCTTCATTCCC miRNA* GAATGACGTGTGGCCCGAAGC mismatches: 5 bulges: 0 |
pre-miRNA
GGAAGATGTTATATATATGTGACATTGCCGTGAGGAATGACGTGTGGCCCGAAGCCATATCTTGGGTTGCCTTGATGAAGCTCCGGACCAGGCTTCATTCC
CCTCGGCAGAGTTGCAACAAGTGGGAAAGGG
dot-bracket secondary structure
)................((..((.((((((.(.(((((((.((.(((.(((.(((..((((..((....))..))))..))).))).))).)).)))))))
.).)))))).))..))...............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GGAAGATGTTATATATATGTGACATTGCCGTGAGGAATGACGTGTGGCCCGAAGCCATATCTTGGGTTGCCTTGATGAAGCTCCGGACCAGGCTTCATTCC
CCTCGGCAGAGTTGCAACAAGTGGGAAAGGG
dot-bracket secondary structure
)................((..((.((((((.(.(((((((.((.(((.(((.(((..((((..((....))..))))..))).))).))).)).)))))))
.).)))))).))..))...............
SIMILARITIES| miRBase ppt-MIR166k: 6.0E-34 PMRD ppt-miR166j: 2.0E-70 microPC miR166: 0.0001 | UniProt no hits RFAM 6mir-166: 7.0E-40 |
Identical with: ppt-miR166j from PMRD (MNEST051377) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
