ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR166
source: miRBase, original name: ppt-MIR166m (MI0005916)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCATCATTCCTT miRNA* GGAATGTGGCATGGCTCGATG mismatches: 5 bulges: 0 |
pre-miRNA
GCCGAGAACAGAGATTGTGTAGCTCAGCTGTAAGGAATGTGGCATGGCTCGATGCTGTTTGAGCATGTCAAGTTCAGCCTCGGACCAGGCATCATTCCTT
TCATCTCAGTTACACATTTGACATCCAGGA
dot-bracket secondary structure
.((..((.....((.(((((((((.((.((.((((((((..((.(((..(((.(((((((((.....)))))..)))).)))..))).))..))))))))
.)).)).))))))))).))....))..)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GCCGAGAACAGAGATTGTGTAGCTCAGCTGTAAGGAATGTGGCATGGCTCGATGCTGTTTGAGCATGTCAAGTTCAGCCTCGGACCAGGCATCATTCCTT
TCATCTCAGTTACACATTTGACATCCAGGA
dot-bracket secondary structure
.((..((.....((.(((((((((.((.((.((((((((..((.(((..(((.(((((((((.....)))))..)))).)))..))).))..))))))))
.)).)).))))))))).))....))..)).
SIMILARITIES| miRBase no hits PMRD ppt-miR166m: 9e-70 microPC no hits | UniProt no hits RFAM mir-166: 4e-38 |
Identical with: ppt-miR166m from PMRD (MNEST051380) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
