ABOUT THIS RECORDspecies: Physcomitrella patens
source: miRBase, original name: ppt-MIR167 (MI0005661)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAAGCTGCCAGCATGATCCT miRNA* ATCAGATCATCTGGCTGCTTTCAT mismatches: 1 bulges: 5 |
pre-miRNA
ACCAAAAGTTGGAAGCTGCCAGCATGATCCTTTAACTTTTCTAGAGGGAAAGATCAGATCATCTGGCTGCTTTCATCCTGTT
dot-bracket secondary structure
.........(((((((.(((((.((((((((((..(((.....)))..))))....))))))))))).))))))).......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
ACCAAAAGTTGGAAGCTGCCAGCATGATCCTTTAACTTTTCTAGAGGGAAAGATCAGATCATCTGGCTGCTTTCATCCTGTT
dot-bracket secondary structure
.........(((((((.(((((.((((((((((..(((.....)))..))))....))))))))))).))))))).......
SIMILARITIES| miRBase no hits PMRD ppt-miR167: 2e-41 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR167 from PMRD (MNEST051381) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
