ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR171_1
source: miRBase, original name: ppt-MIR171a (MI0005688)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCGCGCCAATATCACAT miRNA* GTGATATTGGTGGCGCTCAAT mismatches: 0 bulges: 2 |
pre-miRNA
AGGCATGTGATATTGGTGGCGCTCAATCAGATGACCATGCCTGTGATGCTGGCGTTGCCATCAGATTGAGCCGCGCCAATATCACATCCTT
dot-bracket secondary structure
(((.(((((((((((((((.((((((((.((((.(.(((((.(.....).))))).).)))).))))))))).))))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
AGGCATGTGATATTGGTGGCGCTCAATCAGATGACCATGCCTGTGATGCTGGCGTTGCCATCAGATTGAGCCGCGCCAATATCACATCCTT
dot-bracket secondary structure
(((.(((((((((((((((.((((((((.((((.(.(((((.(.....).))))).).)))).))))))))).))))))))))))))))).
SIMILARITIES| miRBase ppt-MIR171b: 0.00000000007 PMRD ppt-miR171a: 1e-46 microPC miR171: 0.0000003 | UniProt no hits RFAM MIR171_1: 2e-45 |
Identical with: ppt-miR171a from PMRD (MNEST051382) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
