ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR319
source: miRBase, original name: ppt-MIR319a (MI0003496)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGACTGAAGGGAGCTCC miRNA* AGCTCCGTTTCGGTCCAATAG mismatches: 1 bulges: 1 |
pre-miRNA
GTGGAGCTCCGTTTCGGTCCAATAGTGGCTGCGACGGAAGGTGGTCCCGCTGCCGAATCACACGTCCGGGTTGCTTATCGGGGCAGGGCCCCGATACGGT
ATCCGAACGTTTGTCCCGGGAACTGGTCGACCTTCCGCCCGGCGTCTCTTGGACTGAAGGGAGCTCCAC
dot-bracket secondary structure
((((((((((.(((((((((((.((..((((.(.((((((((.(.((.(.(.(((...((.((((.(((((.((((((((((((...))))))))).)))
))))).)))).))...))).).).)).).)))))))).)))))..)).)))))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[3] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GTGGAGCTCCGTTTCGGTCCAATAGTGGCTGCGACGGAAGGTGGTCCCGCTGCCGAATCACACGTCCGGGTTGCTTATCGGGGCAGGGCCCCGATACGGT
ATCCGAACGTTTGTCCCGGGAACTGGTCGACCTTCCGCCCGGCGTCTCTTGGACTGAAGGGAGCTCCAC
dot-bracket secondary structure
((((((((((.(((((((((((.((..((((.(.((((((((.(.((.(.(.(((...((.((((.(((((.((((((((((((...))))))))).)))
))))).)))).))...))).).).)).).)))))))).)))))..)).)))))))))))))))))))))
SIMILARITIES| miRBase ppt-MIR319d: 0.000008 PMRD ppt-miR319a: 6e-93 microPC miR319: 0.0001 | UniProt no hits RFAM MIR159: 0.0002 |
Identical with: ppt-miR319a from PMRD (MNEST051384) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[3] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
