ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR319
source: miRBase, original name: ppt-MIR319b (MI0003497)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGACTGAAGGGAGCTCC miRNA* AGCTCTTTTCAGTCCAGTAG mismatches: 2 bulges: 0 |
pre-miRNA
GAGCTCTTTTCAGTCCAGTAGCAGCTAATGTCGAAGGTTGTACCGCTGCCGACTCAAACTTCCGGCTTCCATATCACGACGCGTGATATGGAATCCGAAG
GTCTGATCCGGGAGCTGATCGATCTCCAGGTTAGCATCTCTTGGACTGAAGGGAGCTCCT
dot-bracket secondary structure
((((((((((((((((((.((..((((((.(.((.(((((....(((.(((..(((.((((.(((.((((((((((((...)))))))))))).))).))
)).)))..))).)))....))))))).).))))))..)).))))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GAGCTCTTTTCAGTCCAGTAGCAGCTAATGTCGAAGGTTGTACCGCTGCCGACTCAAACTTCCGGCTTCCATATCACGACGCGTGATATGGAATCCGAAG
GTCTGATCCGGGAGCTGATCGATCTCCAGGTTAGCATCTCTTGGACTGAAGGGAGCTCCT
dot-bracket secondary structure
((((((((((((((((((.((..((((((.(.((.(((((....(((.(((..(((.((((.(((.((((((((((((...)))))))))))).))).))
)).)))..))).)))....))))))).).))))))..)).))))))))))))))))))..
SIMILARITIES| miRBase ppt-MIR319d: 7e-34 PMRD ppt-miR319b: 1e-87 microPC miR319: 0.0001 | UniProt no hits RFAM MIR159: 3e-86 |
Identical with: ppt-miR319b from PMRD (MNEST051385) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
