ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR159
source: miRBase, original name: ppt-MIR319c (MI0003498)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGACTGAAGGGAGCTCCC miRNA* GAGCTTCCTTCGGTTCAATAG mismatches: 1 bulges: 0 |
pre-miRNA
TAACCTCACTGGCTGTGGGAGCTTCCTTCGGTTCAATAGTGGCTGATATGAGGTTGCACTGCTGCCGACTCAAACTTCCGGCTTCCCTCTCTTAGAATGG
CAGGGAATCCGAATGTCTGATGCGGGAGCTGAGCGGTCTTCAACTCAGCTTCTCTTGGACTGAAGGGAGCTCCCATGTCTTTGTGGTTA
dot-bracket secondary structure
(((((.((..(((.((((((((((((((((((((((.((.((((((..(((((((((.(.(((.(((..(((.((...(((.((((((.((.......))
.)))))).)))...)).)))..))).))).).)))).)))))..)))))).)).)))))))))))))))))))))))))..)).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
TAACCTCACTGGCTGTGGGAGCTTCCTTCGGTTCAATAGTGGCTGATATGAGGTTGCACTGCTGCCGACTCAAACTTCCGGCTTCCCTCTCTTAGAATGG
CAGGGAATCCGAATGTCTGATGCGGGAGCTGAGCGGTCTTCAACTCAGCTTCTCTTGGACTGAAGGGAGCTCCCATGTCTTTGTGGTTA
dot-bracket secondary structure
(((((.((..(((.((((((((((((((((((((((.((.((((((..(((((((((.(.(((.(((..(((.((...(((.((((((.((.......))
.)))))).)))...)).)))..))).))).).)))).)))))..)))))).)).)))))))))))))))))))))))))..)).)))))
SIMILARITIES| miRBase ppt-MIR319e: 1e-51 PMRD ppt-miR319c: 8e-105 microPC miR319: 0.00004 | UniProt no hits RFAM MIR159: 4e-98 |
Identical with: ppt-miR319c from PMRD (MNEST051386) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
