ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR159
source: miRBase, original name: ppt-MIR319e (MI0005665)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGACTGAAGGGAGCTCCC miRNA* GAGCTCCTTCCGGTTCAATAG mismatches: 2 bulges: 0 |
pre-miRNA
CTAGCCGTGGGAGCTCCTTCCGGTTCAATAGTGGCTGATGTGAGGTTGCACTGCTGCCGATTCAAACTTCCGGCTTCCCTTTCTTAACACGACAGGGAAT
CCGAATGTCTGATGCGGGAGCTGTGCGGTCTTCAACTTTAGCGCCTCTTGGACTGAAGGGAGCTCCCAAGTCTT
dot-bracket secondary structure
.......((((((((((((.((((((((.((..(((((..(((((((((((.(((.(((..(((.((...(((.((((((.((.......)).)))))).
)))...)).)))..))).))).)))))).)))))...)))))..)).)))))))).))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
CTAGCCGTGGGAGCTCCTTCCGGTTCAATAGTGGCTGATGTGAGGTTGCACTGCTGCCGATTCAAACTTCCGGCTTCCCTTTCTTAACACGACAGGGAAT
CCGAATGTCTGATGCGGGAGCTGTGCGGTCTTCAACTTTAGCGCCTCTTGGACTGAAGGGAGCTCCCAAGTCTT
dot-bracket secondary structure
.......((((((((((((.((((((((.((..(((((..(((((((((((.(((.(((..(((.((...(((.((((((.((.......)).)))))).
)))...)).)))..))).))).)))))).)))))...)))))..)).)))))))).))))))))))))......
SIMILARITIES| miRBase ppt-MIR319c: 1e-51 PMRD ppt-miR319e: 7e-96 microPC miR319: 0.00003 | UniProt no hits RFAM MIR159: 1e-94 |
Identical with: ppt-miR319e from PMRD (MNEST051390) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
