ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR390
source: miRBase, original name: ppt-MIR390b (MI0003495)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCCATTCTGAGCTTTG mismatches: 3 bulges: 0 |
pre-miRNA
ATCAAGCTGCTGGGAGATACAATTACGAAGCTCAGGAGGGATAGCGCCCAGCCCTGCTTTTACTGTTCAATCAGTTAGAGTGCTTCTGATAGTAAGATGC
AGATGCATGACGCTATCCATTCTGAGCTTTGCAACTGTGTCCCCCTAATTTGGGCAACCGGATCGGTTAGCTGGT
dot-bracket secondary structure
((((.(((((((((.((((((.((.((((((((((((.((((((((..((((.(((((((((((((.((...(((......)))..))))))))))).))
))..)).)).)))))))).)))))))))))).)).)))))).)))..((((((....)))))).)).))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
ATCAAGCTGCTGGGAGATACAATTACGAAGCTCAGGAGGGATAGCGCCCAGCCCTGCTTTTACTGTTCAATCAGTTAGAGTGCTTCTGATAGTAAGATGC
AGATGCATGACGCTATCCATTCTGAGCTTTGCAACTGTGTCCCCCTAATTTGGGCAACCGGATCGGTTAGCTGGT
dot-bracket secondary structure
((((.(((((((((.((((((.((.((((((((((((.((((((((..((((.(((((((((((((.((...(((......)))..))))))))))).))
))..)).)).)))))))).)))))))))))).)).)))))).)))..((((((....)))))).)).))))))))
SIMILARITIES| miRBase ppt-MIR390a: 0.000000000009 PMRD ppt-miR390b: 2e-96 microPC miR390: 0.0001 | UniProt no hits RFAM MIR390: 2e-68 |
Identical with: ppt-miR390b from PMRD (MNEST051392) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
