ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR390
source: miRBase, original name: ppt-MIR390c (MI0004729)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGCTCAGGAGGGATAGCGCC miRNA* CGCTGTCCATTCTGAGCATTG mismatches: 2 bulges: 0 |
pre-miRNA
GGTATAATTACAGAGCTCAGGAGGGATAGCGCCCATCTCAGTCTTTTTTAGCATCCAATTGAAATGGTTAACATTCCTTTGGATAGCTAGACGGCGAAGC
ATGGCGCTGTCCATTCTGAGCATTGCATTTGTACC
dot-bracket secondary structure
(((((((...(((.((((((((.((((((((((.((((..(((...((((((((((((..(((.((.....)))))..)))))).)))))).)))..)).
)))))))))))).)))))))).)))...)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T, Plant J. 47:25-37(2006)., "Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[3] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GGTATAATTACAGAGCTCAGGAGGGATAGCGCCCATCTCAGTCTTTTTTAGCATCCAATTGAAATGGTTAACATTCCTTTGGATAGCTAGACGGCGAAGC
ATGGCGCTGTCCATTCTGAGCATTGCATTTGTACC
dot-bracket secondary structure
(((((((...(((.((((((((.((((((((((.((((..(((...((((((((((((..(((.((.....)))))..)))))).)))))).)))..)).
)))))))))))).)))))))).)))...)))))))
SIMILARITIES| miRBase ppt-MIR390b: 0.00003 PMRD ppt-miR390c: 1e-72 microPC miR390: 0.0004 | UniProt no hits RFAM MIR390: 0.0005 |
Identical with: ppt-miR390c from PMRD (MNEST051393) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T, Plant J. 47:25-37(2006)., "Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[3] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
