ABOUT THIS RECORDspecies: Physcomitrella patens
source: miRBase, original name: ppt-MIR408 (MI0005668)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCACTGCATCTTCCCTGTGC miRNA* ATAGGCAGGGCAGCCAGTG mismatches: 3 bulges: 3 |
pre-miRNA
ACAACCAGCACTGCACTGCATCTTCCCTGTGCCATCTTCGTCGATTGTCTCGTACCGAAAGTGATTCAACCACAGCGAGATCAGACTCAACTGTTAAAGC
TGATGACACTGATACGAGATGATGAAGACATAGGCAGGGCAGCCAGTG
dot-bracket secondary structure
........(((((..((((.(((..((((((...((((((((....((((((((.....((((..(((....((((.....(((......))).....))
)).)))))))..)))))))))))))))))))))).))))))).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
ACAACCAGCACTGCACTGCATCTTCCCTGTGCCATCTTCGTCGATTGTCTCGTACCGAAAGTGATTCAACCACAGCGAGATCAGACTCAACTGTTAAAGC
TGATGACACTGATACGAGATGATGAAGACATAGGCAGGGCAGCCAGTG
dot-bracket secondary structure
........(((((..((((.(((..((((((...((((((((....((((((((.....((((..(((....((((.....(((......))).....))
)).)))))))..)))))))))))))))))))))).))))))).)))))
SIMILARITIES| miRBase no hits PMRD ppt-miR408: 2e-80 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR408 from PMRD (MNEST051396) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
