ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR408
source: miRBase, original name: ppt-MIR408b (MI0005917)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* CCAGCGTGAGGCAATGCATG mismatches: 3 bulges: 1 |
pre-miRNA
GTGGAAGAGAGAGAGTGGTGGAAGGGAGGGAAGCCAGCGTGAGGCAATGCATGACAACAGCATGCCCAGGAGGTCCTGAGGGTGTTGTCCTCATGCACTG
CCTCTTCCCTGGCTTCCCTACATAGCTCGCCATTCTTGTGCTCT
dot-bracket secondary structure
.....((((.(((((((((((....((((((((((((.(.((((((.(((((((..(((((((.(.((((....)))).).)))))))..))))))).))
))))..).))))))))))).)....).))))))))))...))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GTGGAAGAGAGAGAGTGGTGGAAGGGAGGGAAGCCAGCGTGAGGCAATGCATGACAACAGCATGCCCAGGAGGTCCTGAGGGTGTTGTCCTCATGCACTG
CCTCTTCCCTGGCTTCCCTACATAGCTCGCCATTCTTGTGCTCT
dot-bracket secondary structure
.....((((.(((((((((((....((((((((((((.(.((((((.(((((((..(((((((.(.((((....)))).).)))))))..))))))).))
))))..).))))))))))).)....).))))))))))...))))
SIMILARITIES| miRBase ahy-MIR408: 0.0000005 PMRD ppt-miR408b: 4e-78 microPC miR408: 0.0000005 | UniProt no hits RFAM MIR408: 0.000002 |
Identical with: ppt-miR408b from PMRD (MNEST051397) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
