ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR414
source: miRBase, original name: ppt-MIR414 (MI0005669)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCCTCATCATCCTCGTCC miRNA* mismatches: 19 bulges: 0 |
pre-miRNA
AGACGTTCAAGAACAATTAGAGAAGACCAATGCTAGAATGTGGGGCTCACCAGATTTTCCAACTGCATTGGCTAGCTCTGCTAGCGCTTTGGCAGTAACC
ATATCTTTGTCATCTTCATCATCGTCATCTTCGTCATCATCTTCGTCATCCTCATCATCCTCGTCCTCAGCATCAG
dot-bracket secondary structure
.((((...((((.......((((.(((((((((.(((((.(((......))).)))))......))))))((((((...))))))....((((((.....
......))))))...........))).))))........)))))))).............................
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
AGACGTTCAAGAACAATTAGAGAAGACCAATGCTAGAATGTGGGGCTCACCAGATTTTCCAACTGCATTGGCTAGCTCTGCTAGCGCTTTGGCAGTAACC
ATATCTTTGTCATCTTCATCATCGTCATCTTCGTCATCATCTTCGTCATCCTCATCATCCTCGTCCTCAGCATCAG
dot-bracket secondary structure
.((((...((((.......((((.(((((((((.(((((.(((......))).)))))......))))))((((((...))))))....((((((.....
......))))))...........))).))))........)))))))).............................
SIMILARITIES| miRBase no hits PMRD ppt-miR414: 4e-51 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
