ABOUT THIS RECORDspecies: Physcomitrella patens
source: miRBase, original name: ppt-MIR419 (MI0005670)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATGAATGATGACGATGTAT miRNA* GTTAGTTATAGTTCTAACCGTAAGT mismatches: 7 bulges: 6 |
pre-miRNA
GGTTGCCTGTGTTAGTTATAGTTCTAACCGTAAGTCCACGTCGGAGGAGGCTGATGAATGATGACGATGTATAGGCCTATCT
dot-bracket secondary structure
(((.(((((((...(((((.((((........((((..(......)..))))...)))).)))))....)))))))..))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
GGTTGCCTGTGTTAGTTATAGTTCTAACCGTAAGTCCACGTCGGAGGAGGCTGATGAATGATGACGATGTATAGGCCTATCT
dot-bracket secondary structure
(((.(((((((...(((((.((((........((((..(......)..))))...)))).)))))....)))))))..))).
SIMILARITIES| miRBase no hits PMRD ppt-miR419: 2e-41 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR419 from PMRD (MNEST051399) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
