ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR477
source: miRBase, original name: ppt-MIR477a (MI0005672)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAAGCCTTTGTGGGAGAGGA miRNA* CTCTCCCTCAAAGGCTTCCAA mismatches: 2 bulges: 0 |
pre-miRNA
GTTGCTTTTTCCTCTCCCTCAAAGGCTTCCAACATGATGTGCGTAAGCCACAACGTTAGAAGCCTTTGTGGGAGAGGAAGAAACA
dot-bracket secondary structure
..((.(((((((((((((.((((((((((.(((.((.((.((....))))))..))).)))))))))).))))))))))))).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, 454
deep sequencing data evidence
references
[1] Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T, Plant J. 47:25-37(2006)., "Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[3] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GTTGCTTTTTCCTCTCCCTCAAAGGCTTCCAACATGATGTGCGTAAGCCACAACGTTAGAAGCCTTTGTGGGAGAGGAAGAAACA
dot-bracket secondary structure
..((.(((((((((((((.((((((((((.(((.((.((.((....))))))..))).)))))))))).))))))))))))).))
SIMILARITIES| miRBase ppt-MIR477a: 4e-43 PMRD ppt-miR477d: 0.000000001 microPC no hits | UniProt no hits RFAM MIR473: 7e-42 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, 454
deep sequencing data evidence
references
[1] Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T, Plant J. 47:25-37(2006)., "Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss"
[2] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[3] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
