ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR477
source: miRBase, original name: ppt-MIR477c (MI0005671)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTCCCTCAAAGGCTTCCA miRNA* GAAGTCTTTGTTGAAGAGGA mismatches: 3 bulges: 0 |
pre-miRNA
GTTGATTTTTCCTCTCCCTCAAAGGCTTCCAACGTCCTTTTTGTGAGCAAGCACGCTGGAAGTCTTTGTTGAAGAGGAGGAAACA
dot-bracket secondary structure
..((.((((((((((.(..((((((((((((.(((.(((.........))).))).))))))))))))..).)))))))))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, 454, cloned
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GTTGATTTTTCCTCTCCCTCAAAGGCTTCCAACGTCCTTTTTGTGAGCAAGCACGCTGGAAGTCTTTGTTGAAGAGGAGGAAACA
dot-bracket secondary structure
..((.((((((((((.(..((((((((((((.(((.(((.........))).))).))))))))))))..).)))))))))).))
SIMILARITIES| miRBase ppt-MIR477a: 0.000000001 PMRD ppt-miR477c: 4e-43 microPC no hits | UniProt no hits RFAM MIR473: 0.00000002 |
Identical with: ppt-miR477c from PMRD (MNEST051401) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, 454, cloned
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
