ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR477
source: miRBase, original name: ppt-MIR477d (MI0005918)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTCCCTCAAAGGCTTCCA miRNA* GAAGCCTCTGGGGGTGACGA mismatches: 4 bulges: 0 |
pre-miRNA
GTTGATTTCGATTAAACAGATTGCTTGTTCCTCTCCCTCAAAGGCTTCCAACAACAGGTACTTGGTCTTGTTTTCACCAGCAAAGCTAAGGCCCGTCCCA
GATGTTAGAAGCCTCTGGGGGTGACGAAGCAGCAGCTGTATGGGTGGTTCCCAT
dot-bracket secondary structure
((((....))))...((((.(((((..(((.((.((((((.(((((((.((((((.(((.(((((..(((((......)))))..)))))))).))....
..)))).))))))).)))))).)).)))..))))))))).((((.....)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GTTGATTTCGATTAAACAGATTGCTTGTTCCTCTCCCTCAAAGGCTTCCAACAACAGGTACTTGGTCTTGTTTTCACCAGCAAAGCTAAGGCCCGTCCCA
GATGTTAGAAGCCTCTGGGGGTGACGAAGCAGCAGCTGTATGGGTGGTTCCCAT
dot-bracket secondary structure
((((....))))...((((.(((((..(((.((.((((((.(((((((.((((((.(((.(((((..(((((......)))))..)))))))).))....
..)))).))))))).)))))).)).)))..))))))))).((((.....)))).
SIMILARITIES| miRBase ppt-MIR477a: 0.000000002 PMRD ppt-miR477d: 5e-84 microPC no hits | UniProt no hits RFAM MIR473: 4e-60 |
Identical with: ppt-miR477d from PMRD (MNEST051402) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
