ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR477
source: miRBase, original name: ppt-MIR477e (MI0005919)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTCCCTCAAAGGCTTCCA miRNA* GAAGCCTTTGTGGGAGAGGG mismatches: 3 bulges: 0 |
pre-miRNA
GATGAGAAGATTCCGAAAGGCGGTTGCTTATCTCTCTCCCTCAAAGGCTTCCAACATCAGGTGTAGAAGCCTTGCTAGAAGCCTTTGTGGGAGAGGGGGA
AACAAACGCCTTGCATTATTGCCGTTC
dot-bracket secondary structure
................((((((.(((.((..(((((((((.((((((((((...((..((((......))))))...)))))))))).)))))))))..)
).))).))))))(((....))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GATGAGAAGATTCCGAAAGGCGGTTGCTTATCTCTCTCCCTCAAAGGCTTCCAACATCAGGTGTAGAAGCCTTGCTAGAAGCCTTTGTGGGAGAGGGGGA
AACAAACGCCTTGCATTATTGCCGTTC
dot-bracket secondary structure
................((((((.(((.((..(((((((((.((((((((((...((..((((......))))))...)))))))))).)))))))))..)
).))).))))))(((....))).....
SIMILARITIES| miRBase ppt-MIR477d: 0.0000004 PMRD ppt-miR477e: 5e-68 microPC no hits | UniProt no hits RFAM MIR473: 2e-40 |
Identical with: ppt-miR477e from PMRD (MNEST051403) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
