ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR477
source: miRBase, original name: ppt-MIR477f (MI0005673)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTCAAAGGCTTCCAACAA miRNA* GTCGGAAGCCTTCGAGGGAGA mismatches: 3 bulges: 0 |
pre-miRNA
GTGTTTGTTTTTCTCCCTCAAAGGCTTCCAACAACAGGAGGGTACAATTCCATTGTGGTTATAACCCATAGTTGAGGTGTTTTTGCTCTCTCTGCTGTCG
GAAGCCTTCGAGGGAGATGAAAGAATT
dot-bracket secondary structure
..((((.(((.((((((((.(((((((((.(((.((((((((((((.(((.(((((((.......))))))).))).)))....)))))).))).))).)
)))))))).)))))))).))).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, 454, cloned
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GTGTTTGTTTTTCTCCCTCAAAGGCTTCCAACAACAGGAGGGTACAATTCCATTGTGGTTATAACCCATAGTTGAGGTGTTTTTGCTCTCTCTGCTGTCG
GAAGCCTTCGAGGGAGATGAAAGAATT
dot-bracket secondary structure
..((((.(((.((((((((.(((((((((.(((.((((((((((((.(((.(((((((.......))))))).))).)))....)))))).))).))).)
)))))))).)))))))).))).)))).
SIMILARITIES| miRBase ppt-MIR477g: 0.000000000007 PMRD ppt-miR477f: 5e-68 microPC no hits | UniProt no hits RFAM MIR477: 1e-66 |
Identical with: ppt-miR477f from PMRD (MNEST051404) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, 454, cloned
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
