ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR477
source: miRBase, original name: ppt-MIR477h (MI0005920)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCCCTCAAAGGCTTCCA miRNA* GATGCCTTAGTGGGAGATG mismatches: 3 bulges: 0 |
pre-miRNA
TCAGAGGGAGTATACTCAGGTGTTTGTTTTTCTCCCTCAAAGGCTTCCAACTACATCAGCATTCTATTCCACTTCTGGCTTAAGATGCAGTGAATTTGCG
TTGTTGTTGGATGCCTTAGTGGGAGATGTACATACCCCTGTCATTGATGTGTTGC
dot-bracket secondary structure
.(((.(((...((((....)))).(((...((((((.(.(((((.((((((.(((...((((..((..(((....)))..))..)))).((......)).
.))).)))))).))))).).))))))...)))..))))))...............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
TCAGAGGGAGTATACTCAGGTGTTTGTTTTTCTCCCTCAAAGGCTTCCAACTACATCAGCATTCTATTCCACTTCTGGCTTAAGATGCAGTGAATTTGCG
TTGTTGTTGGATGCCTTAGTGGGAGATGTACATACCCCTGTCATTGATGTGTTGC
dot-bracket secondary structure
.(((.(((...((((....)))).(((...((((((.(.(((((.((((((.(((...((((..((..(((....)))..))..)))).((......)).
.))).)))))).))))).).))))))...)))..))))))...............
SIMILARITIES| miRBase ppt-MIR477f: 0.00000000003 PMRD ppt-miR477h: 1e-84 microPC no hits | UniProt no hits RFAM MIR477: 0.0000000006 |
Identical with: ppt-miR477h from PMRD (MNEST051405) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
