ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR529
source: miRBase, original name: ppt-MIR529d (MI0005924)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAAGAGAGAGAGCACAGCCC miRNA* GCTGTGCTCTCTCTCTTCTTG mismatches: 0 bulges: 0 |
pre-miRNA
CTAGCTTCTCCACAATTTCTCACCCTCGTTGGGATCAGAAGAGAGAGAGCACAGCCCGATGTCCAATGTTCAGGTCGAATGGGCTGTGCTCTCTCTCTTC
TTGCTCCAACTTGGGTGCTACACGCATCTAGGGTAC
dot-bracket secondary structure
.....................((((..(((((..(.((((((((((((((((((((((.((.((........)).))..)))))))))))))))))))))
).)..))))).(((((((.....)))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
CTAGCTTCTCCACAATTTCTCACCCTCGTTGGGATCAGAAGAGAGAGAGCACAGCCCGATGTCCAATGTTCAGGTCGAATGGGCTGTGCTCTCTCTCTTC
TTGCTCCAACTTGGGTGCTACACGCATCTAGGGTAC
dot-bracket secondary structure
.....................((((..(((((..(.((((((((((((((((((((((.((.((........)).))..)))))))))))))))))))))
).)..))))).(((((((.....)))))))))))..
SIMILARITIES| miRBase ppt-MIR529f: 2e-21 PMRD ppt-miR529d: 2e-73 microPC miR156: 0.0004 | UniProt no hits RFAM no hits |
Identical with: ppt-miR529d from PMRD (MNEST051409) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
