ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR529
source: miRBase, original name: ppt-MIR529g (MI0005927)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGAAGAGAGAGAGCACAGTCC miRNA* GCTGTACTCTCTCTTTTCCAG mismatches: 2 bulges: 0 |
pre-miRNA
TCACCTTTTTCTACATTCAAGCTGGGGTTCGAAGAGAGAGAGCACAGTCCCAGACTTTTCACTCACGACCACTTTGAGTGTCTTATGGTGAACAGTAGTC
GGGCTGTACTCTCTCTTTTCCAGTCCCTACTCGAATGTGTTTCTATCGC
dot-bracket secondary structure
...........(((((((.((..(((..(.((((((((((((.(((((((...(((.((((((...(((.((.....)))))....)))))).)))....
))))))).)))))))))))).)..)))..)).)))))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
TCACCTTTTTCTACATTCAAGCTGGGGTTCGAAGAGAGAGAGCACAGTCCCAGACTTTTCACTCACGACCACTTTGAGTGTCTTATGGTGAACAGTAGTC
GGGCTGTACTCTCTCTTTTCCAGTCCCTACTCGAATGTGTTTCTATCGC
dot-bracket secondary structure
...........(((((((.((..(((..(.((((((((((((.(((((((...(((.((((((...(((.((.....)))))....)))))).)))....
))))))).)))))))))))).)..)))..)).)))))))..........
SIMILARITIES| miRBase ppt-MIR529b: 0.0000000000005 PMRD ppt-miR529g: 5e-81 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR529g from PMRD (MNEST051412) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
