ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR533
source: miRBase, original name: ppt-MIR533d (MI0005929)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCACAGTCTGCACAGCTCTC miRNA* GAGCTGTTCAGACTCTGAGAG mismatches: 2 bulges: 0 |
pre-miRNA
CAGCATCAGCTCAGGGGCAGTAGCATGGAGAGCTGTTCAGACTCTGAGAGAGGGGTGTGGAAAACATGTACTGTTGTATCGACACTCGTCGCTCACAGTC
TGCACAGCTCTCTGTGTTGCTCCCTCTAATTGACTTCA
dot-bracket secondary structure
.(((....))).(((((.((((((((((((((((((.((((((.((((.((.((((((.((.((((.....))))...)).)))))).)).)))).))))
)).)))))))))))))))))).)))))...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
CAGCATCAGCTCAGGGGCAGTAGCATGGAGAGCTGTTCAGACTCTGAGAGAGGGGTGTGGAAAACATGTACTGTTGTATCGACACTCGTCGCTCACAGTC
TGCACAGCTCTCTGTGTTGCTCCCTCTAATTGACTTCA
dot-bracket secondary structure
.(((....))).(((((.((((((((((((((((((.((((((.((((.((.((((((.((.((((.....))))...)).)))))).)).)))).))))
)).)))))))))))))))))).)))))...........
SIMILARITIES| miRBase ppt-MIR533c: 0.000002 PMRD ppt-miR533d: 2e-74 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR533d from PMRD (MNEST051416) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
