ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR533
source: miRBase, original name: ppt-MIR533e (MI0005930)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCACAGTCTGCATGGCTCTC miRNA* GAGCTGGCCAGACTGTGAGGG mismatches: 2 bulges: 0 |
pre-miRNA
GAGTGGTTGTGCATGACGAGGCAGCGACAGAGAGAGCTGGCCAGACTGTGAGGGATGGAGCGAATTTAGCTTGTGCCTTGTGTGGCTCACTCGTGCAGCT
CCCTCACAGTCTGCATGGCTCTCCGTGTCTCTTCCTCTTTTCGGCCACGTTGG
dot-bracket secondary structure
..(((((((.....((.((((.((.((((..((((((((..((((((((((((((..((((.......)))).((((..(((.....)))..).)))..)
)))))))))))))..))))))))..)))).)).)))).)).))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GAGTGGTTGTGCATGACGAGGCAGCGACAGAGAGAGCTGGCCAGACTGTGAGGGATGGAGCGAATTTAGCTTGTGCCTTGTGTGGCTCACTCGTGCAGCT
CCCTCACAGTCTGCATGGCTCTCCGTGTCTCTTCCTCTTTTCGGCCACGTTGG
dot-bracket secondary structure
..(((((((.....((.((((.((.((((..((((((((..((((((((((((((..((((.......)))).((((..(((.....)))..).)))..)
)))))))))))))..))))))))..)))).)).)))).)).))))))).....
SIMILARITIES| miRBase ppt-MIR533b: 0.0005 PMRD ppt-miR533e: 2e-83 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR533e from PMRD (MNEST051417) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
