ABOUT THIS RECORDspecies: Physcomitrella patens
source: miRBase, original name: ppt-MIR536f (MI0005934)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCGTGCCAAGCTGTGTGCA miRNA* CCATAGTTTGGTATGAAGC mismatches: 1 bulges: 1 |
pre-miRNA
TTCGACGTCGTGTTAAGTGTGATTCCTTAGCAGCCATAGTTTGGTATGAAGCTCTCTCTGAACATCAGATATCGGTCGGTAGAGTTGAGGTTTGTTCACA
TGACCTTAGCTCTGTTTTCCGAGCGCTTCGTGCCAAGCTGTGTGCATCTAAGGGAATCTCACTTCTGAACAGAAAG
dot-bracket secondary structure
.......((.(((((((((.((((((((((..((((((((((((((((((((....((((.....))))..((((..(((((((((((((((((....))
.)))))))))))))))..))))..)))))))))))))))))).))..)))).)))))).)))))...))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
TTCGACGTCGTGTTAAGTGTGATTCCTTAGCAGCCATAGTTTGGTATGAAGCTCTCTCTGAACATCAGATATCGGTCGGTAGAGTTGAGGTTTGTTCACA
TGACCTTAGCTCTGTTTTCCGAGCGCTTCGTGCCAAGCTGTGTGCATCTAAGGGAATCTCACTTCTGAACAGAAAG
dot-bracket secondary structure
.......((.(((((((((.((((((((((..((((((((((((((((((((....((((.....))))..((((..(((((((((((((((((....))
.)))))))))))))))..))))..)))))))))))))))))).))..)))).)))))).)))))...))))))...
SIMILARITIES| miRBase ppt-MIR536e: 0.0005 PMRD ppt-miR536f: 4e-97 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR536f from PMRD (MNEST051429) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
