ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR537
source: miRBase, original name: ppt-MIR537b (MI0003509)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGGTGTTTCTACAGGCTA miRNA* GACTGTAGAAACACCTGAAGT mismatches: 2 bulges: 0 |
pre-miRNA
TCATATCTGGACTGTAGAAACACCTGAAGTGACTGAAGTTAGTCCGGTTTAGGTATGAGAATGATTGGAGCACCTCTCCAGATGTTCCAGATGTAATGAA
ACCGGTGCAAGCTTCAAGCTCTTGAGGTGTTTCTACAGGCTACATATGA
dot-bracket secondary structure
((((((.(((.((((((((((((((.(((.(..(((((((.(((((((((.....((.(((((.((((((.....)))))).))))))).........))
))))).)).)))))))..).))).)))))))))))))).))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
TCATATCTGGACTGTAGAAACACCTGAAGTGACTGAAGTTAGTCCGGTTTAGGTATGAGAATGATTGGAGCACCTCTCCAGATGTTCCAGATGTAATGAA
ACCGGTGCAAGCTTCAAGCTCTTGAGGTGTTTCTACAGGCTACATATGA
dot-bracket secondary structure
((((((.(((.((((((((((((((.(((.(..(((((((.(((((((((.....((.(((((.((((((.....)))))).))))))).........))
))))).)).)))))))..).))).)))))))))))))).))).))))))
SIMILARITIES| miRBase ppt-MIR537c: 5e-81 PMRD ppt-miR537c: 5e-81 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR537c from PMRD (MNEST051432) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
