ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR537
source: miRBase, original name: ppt-MIR537d (MI0005936)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGGTGTTTCTACAGGCTA miRNA* GACTGTAGAAACACCTGAAGC mismatches: 2 bulges: 0 |
pre-miRNA
TTGAACAATGTCATTATCATACATAGACTGTAGAAACACCTGAAGCTATTGATCTCTACTTTGTTGTAACCGATCTTTATGGAAAGTGCACGAAAATGTG
TATGCTGTGATCGCACGATTGGTGACATCAGTAACTTGAGGTGTTTCTACAGGCTACTTATGCTTGATGATTATCTTA
dot-bracket secondary structure
.........(((((((.((((..(((.((((((((((((((.(((.(((((((.((.(((..(((((...(((((...((((...((((((......)))
))).))))))))).))))).))))).))))))).))).)))))))))))))).)))..))))..))))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
TTGAACAATGTCATTATCATACATAGACTGTAGAAACACCTGAAGCTATTGATCTCTACTTTGTTGTAACCGATCTTTATGGAAAGTGCACGAAAATGTG
TATGCTGTGATCGCACGATTGGTGACATCAGTAACTTGAGGTGTTTCTACAGGCTACTTATGCTTGATGATTATCTTA
dot-bracket secondary structure
.........(((((((.((((..(((.((((((((((((((.(((.(((((((.((.(((..(((((...(((((...((((...((((((......)))
))).))))))))).))))).))))).))))))).))).)))))))))))))).)))..))))..))))))).......
SIMILARITIES| miRBase ppt-MIR537a: 0.0000001 PMRD ppt-miR537d: 3e-98 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR537d from PMRD (MNEST051433) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
