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ABOUT THIS RECORD

ID: MNEST039532
species: Physcomitrella patens
miRNA family: MIR538
source: miRBase, original name: ppt-MIR538a (MI0003510)

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGCATGGAGTCTATGTCTGGA

miRNA*
CAGACGTAGCCTTCATGCATG

mismatches: 1
bulges: 1

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pre-miRNA
TTACAATGAGTTTGTGAGTCTCCATGCTGCTCTAACATTGCATGGAGTCTATGTCTGGAGTATTGTCCTTCATTCCCGTGCAAATGCTGAAGTAATGCAA
GAATGTGAACATTGGGACTATTCCAGACGTAGCCTTCATGCATGTTAGAGTGATGTGGAAACCCGTGAACTACTTGTAA


dot-bracket secondary structure
.(((((..((((..((.((.((((((..((((((((((.((((((((.((((((((((((((..(((((.(((((...((((..(((....))).)))).
)))))........))))))))))))))))))).))))))))))))))))))..)))))).)).))..))))..))))).



SIMILARITIES
miRBase ppt-MIR538c: 0.0000000000006

PMRD ppt-miR538a: 7e-99

microPC miR538: 1e-54
UniProt no hits

RFAM no hits

Identical with: ppt-miR538a from PMRD (MNEST051434)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, 454
deep sequencing data evidence

references

[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"




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