ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR538
source: miRBase, original name: ppt-MIR538c (MI0003512)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCATGGAGTCTATGTCTGGA miRNA* CGGACATAGCCTTCATGCATG mismatches: 1 bulges: 1 |
pre-miRNA
TTACAAAGAGTTCTTGAGTCTCCATGCTTCTCTGACGTTGCATGGAGTCTATGTCTGGACCTTCTCCATTTCCTCTTTCAAGAGAATGTGAGCATTGAAG
GATTCGGACATAGCCTTCATGCATGCTAGAGTATCATGGAGGCCCGTGAACTACTTGTAA
dot-bracket secondary structure
.(((((..(((((.((.(((((((((...(((((.(((.((((((((.((((((((((((((((.((((...((((....))))...))).)....))))
).))))))))))).))))))))))).)))))...))))))))).)).)))))..))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
TTACAAAGAGTTCTTGAGTCTCCATGCTTCTCTGACGTTGCATGGAGTCTATGTCTGGACCTTCTCCATTTCCTCTTTCAAGAGAATGTGAGCATTGAAG
GATTCGGACATAGCCTTCATGCATGCTAGAGTATCATGGAGGCCCGTGAACTACTTGTAA
dot-bracket secondary structure
.(((((..(((((.((.(((((((((...(((((.(((.((((((((.((((((((((((((((.((((...((((....))))...))).)....))))
).))))))))))).))))))))))).)))))...))))))))).)).)))))..))))).
SIMILARITIES| miRBase ppt-MIR538b: 8e-40 PMRD ppt-miR538c: 1e-87 microPC miR538: 0.00003 | UniProt no hits RFAM no hits |
Identical with: ppt-miR538c from PMRD (MNEST051436) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC, Plant J. 43:837-848(2005)., "Cloning and characterization of micro-RNAs from moss"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
