ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR898
source: miRBase, original name: ppt-MIR898a (MI0005695)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCTGTGCACTACTTAGTAC miRNA* GCTAGGCAGTGCACAGCGATA mismatches: 1 bulges: 0 |
pre-miRNA
CGCAGCGAAGCTTAGCTACACACCAAACTCTCTTGTTTGTTTCCGGCGTATTGCTGTGCACTACTTAGTACACGCGTATCGGTTTGCACTCCAGATGTAG
CAATTGAAAACGAAGATATTCCTGGAAAGTTTGCAACCGCGTGGGTGCTAGGCAGTGCACAGCGATATGCTGGGTATGGACAGCTACTTTTGAACTCAAT
CATTTAGTAACTACAGCGCT
dot-bracket secondary structure
...((((.....(((.(((.............(((((..(.(((((((((((((((((((((.((((((((.((((...(((((.(((.(((((..(((.
...(((....)))...)))..))))).....)))))))))))).)))))))).))))))))))))))))))))).)..)))))......(((....))).
......))).)))...))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
CGCAGCGAAGCTTAGCTACACACCAAACTCTCTTGTTTGTTTCCGGCGTATTGCTGTGCACTACTTAGTACACGCGTATCGGTTTGCACTCCAGATGTAG
CAATTGAAAACGAAGATATTCCTGGAAAGTTTGCAACCGCGTGGGTGCTAGGCAGTGCACAGCGATATGCTGGGTATGGACAGCTACTTTTGAACTCAAT
CATTTAGTAACTACAGCGCT
dot-bracket secondary structure
...((((.....(((.(((.............(((((..(.(((((((((((((((((((((.((((((((.((((...(((((.(((.(((((..(((.
...(((....)))...)))..))))).....)))))))))))).)))))))).))))))))))))))))))))).)..)))))......(((....))).
......))).)))...))))
SIMILARITIES| miRBase ppt-MIR898b: 0.00000005 PMRD ppt-miR898a: 3e-123 microPC miR898: 1e-60 | UniProt no hits RFAM no hits |
Identical with: miR898 from microPC (MNEST045986) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
