ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR902
source: miRBase, original name: ppt-MIR902a (MI0005685)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGATGCAGATTCTTCA miRNA* AAGGTCTGCATCATAGC mismatches: 1 bulges: 1 |
pre-miRNA
GCTCGTGACCCTCTGAAGGGAACTTTGGCCTGAGAAGAGCGTGGGATTGTAGGAACATGAGTGGATCTACAGCATTTGAGATTATTCATTTGCATCCGCT
ACGATATGATGCAGATTCTTCACCTGTGTGATACTCTTGAGGTATAACAGACGAAGGTCTGCATCATAGCCAAGCGAACGTAAATCTGGTGCATTCAACA
CTAGATGCTTAATTGAGGTGCAT
dot-bracket secondary structure
((..((..((((....)))).))....((((.((..((((.......((((((..((....))..))))))(((..((((....))))..)))...((((
....((((((((((((.((((..((((...(((((.....))))).))))..))))))))))))))))....)))).......((((((((.......))
))))))))))..)).))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GCTCGTGACCCTCTGAAGGGAACTTTGGCCTGAGAAGAGCGTGGGATTGTAGGAACATGAGTGGATCTACAGCATTTGAGATTATTCATTTGCATCCGCT
ACGATATGATGCAGATTCTTCACCTGTGTGATACTCTTGAGGTATAACAGACGAAGGTCTGCATCATAGCCAAGCGAACGTAAATCTGGTGCATTCAACA
CTAGATGCTTAATTGAGGTGCAT
dot-bracket secondary structure
((..((..((((....)))).))....((((.((..((((.......((((((..((....))..))))))(((..((((....))))..)))...((((
....((((((((((((.((((..((((...(((((.....))))).))))..))))))))))))))))....)))).......((((((((.......))
))))))))))..)).))))))..
SIMILARITIES| miRBase ppt-MIR902a: 5e-125 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
