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ABOUT THIS RECORD

ID: MNEST039548
species: Physcomitrella patens
miRNA family: MIR902
source: miRBase, original name: ppt-MIR902b (MI0005686)

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACGAAGGTCTGCATCATAGC

miRNA*
TATGATGCAGATTCTTCATCT

mismatches: 2
bulges: 1

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pre-miRNA
GGTTGTGATAAATCGGTTCCGTGTCGTCATAATCGCAAGTGTTGCAGGCAGTTATGAGGAGATGGAGAGCGTGCAGACTTGTTTCCTTCCTCTAGCCTAT
GATGCAGATTCTTCATCT
GTTTGTTATCGTTCTCATGGTGTACATAACAGACGAAGGTCTGCATCATAGCCAAGAGGAAGCAAATCTTAATACCTGGCTC
GAATTTGGCCTGCACGCAATTTT


dot-bracket secondary structure
((((......))))..((((((.((.(((((((.((..(.....)..)).))))))).)).)))))).((((((......((((.((((((((.(.((((
(((((((((.((((.(((
((((((((((((....)))))).))).)))))).))))))))))))))))).).)))))))).))))..........((((.
......)))).))))))......



SIMILARITIES
miRBase ppt-MIR902b: 5e-125

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
deep sequencing data evidence

references

[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"




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