ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR902
source: miRBase, original name: ppt-MIR902e (MI0005939)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGATGCAGATTCTTCATCT miRNA* ACGAAGGTCTGCATCATAGT mismatches: 1 bulges: 1 |
pre-miRNA
GACAGCGTGCCGTCTCATTTCCTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTCGTGTGATGCTTGTGCACGAGTCAGACGAAGGTCTGCATCAT
AGTCAAGAGGAAGCAAATATGAAATTCAGGAGC
dot-bracket secondary structure
....((...((.((..((((.(((((.((.(.(((((((((((((.((((.((((.(((((((.........))))))).)))).)))))))))))))))
)).).)).))))).))))..))......)).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GACAGCGTGCCGTCTCATTTCCTTCCGCTAGTCTATGATGCAGATTCTTCATCTGTTTCGTGTGATGCTTGTGCACGAGTCAGACGAAGGTCTGCATCAT
AGTCAAGAGGAAGCAAATATGAAATTCAGGAGC
dot-bracket secondary structure
....((...((.((..((((.(((((.((.(.(((((((((((((.((((.((((.(((((((.........))))))).)))).)))))))))))))))
)).).)).))))).))))..))......)).))
SIMILARITIES| miRBase ppt-MIR902e: 1e-71 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
