ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR902
source: miRBase, original name: ppt-MIR902j (MI0005944)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAAGGATCTGCAACATAGAC miRNA* ATATGTTGCAGATTCTTCATT mismatches: 2 bulges: 0 |
pre-miRNA
GCGGGTTAAAGTTGAACAGGTTGCCTCTCTCGTATATGTTGCAGATTCTTCATTTGTCTAGCTGATCAACTATAGTATTGATTTGTCTAGCTGATCAACT
ATAGTATTGACTGTCATGCAAAAGAAGGATCTGCAACATAGACAAGAATAGGTGATCGATTTTTATACACTCA
dot-bracket secondary structure
..((((.......(((..(((..(((.(((.((.(((((((((((((((((.(((((.(..(.(.(((((((((((..(((((.(.....).))))))))
)))))..)))).)..).))))).))))))))))))))))).)).)))..)))..)))..)))......)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GCGGGTTAAAGTTGAACAGGTTGCCTCTCTCGTATATGTTGCAGATTCTTCATTTGTCTAGCTGATCAACTATAGTATTGATTTGTCTAGCTGATCAACT
ATAGTATTGACTGTCATGCAAAAGAAGGATCTGCAACATAGACAAGAATAGGTGATCGATTTTTATACACTCA
dot-bracket secondary structure
..((((.......(((..(((..(((.(((.((.(((((((((((((((((.(((((.(..(.(.(((((((((((..(((((.(.....).))))))))
)))))..)))).)..).))))).))))))))))))))))).)).)))..)))..)))..)))......)))).
SIMILARITIES| miRBase ppt-MIR902j: 3e-95 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
