ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR902
source: miRBase, original name: ppt-MIR902k (MI0005945)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGAAGGATCTGCAATATAAA miRNA* TATGTTGCAGATTCTTCATTT mismatches: 3 bulges: 0 |
pre-miRNA
GTTGATTTTGCTGCATAGATTATCTTTCTATTCTATGTTGCAGATTCTTCATTTGCCGCTCTGCTGAATGATCATATTGCGGGTGAAGCAAACGAAGGAT
CTGCAATATAAACCAGAAAAGGTAATCGTATTTTGGCCAATA
dot-bracket secondary structure
.........(((..(((((((((((((((....(((((((((((((((((.((((((((.((((..............)))))))..))))).)))))))
))))))))))....)).)))))))))).)))...))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GTTGATTTTGCTGCATAGATTATCTTTCTATTCTATGTTGCAGATTCTTCATTTGCCGCTCTGCTGAATGATCATATTGCGGGTGAAGCAAACGAAGGAT
CTGCAATATAAACCAGAAAAGGTAATCGTATTTTGGCCAATA
dot-bracket secondary structure
.........(((..(((((((((((((((....(((((((((((((((((.((((((((.((((..............)))))))..))))).)))))))
))))))))))....)).)))))))))).)))...))).....
SIMILARITIES| miRBase ppt-MIR902k: 7e-77 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
