ABOUT THIS RECORDspecies: Physcomitrella patens
source: miRBase, original name: ppt-MIR903 (MI0005690)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTACTTCGGCGGGACAAGAGC miRNA* CCCCCATGCCGCCGAGGTGGCCG mismatches: 5 bulges: 1 |
pre-miRNA
GAACGGCTTCGGCTGGTCTGCCGCTCAACGCGGGGCACTGGTCAGCGTGGGCTACTTCGGCGGGACAAGAGCAGGATGTAGTTTCCTGCCCCCCATGCCG
CCGAGGTGGCCGAGGAACGAAGCGTGCGGCCCCCTCTCGGGGGGGTCGTGGGACTCGTCCCAACTGCACGCTCGGGACGCTGGCGTATTGAGCTCTTCAT
CCGACCCGTCTT
dot-bracket secondary structure
..((((..((((.(((...((.((((......))))....((((((((.((((((((((((((.(...(.((((((.......)))))).)....).)))
)))))))))))......(((.((((((((((((((....)))))))).(((((....)))))...)))))))))..)))))))).......))...))).
)))).))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
GAACGGCTTCGGCTGGTCTGCCGCTCAACGCGGGGCACTGGTCAGCGTGGGCTACTTCGGCGGGACAAGAGCAGGATGTAGTTTCCTGCCCCCCATGCCG
CCGAGGTGGCCGAGGAACGAAGCGTGCGGCCCCCTCTCGGGGGGGTCGTGGGACTCGTCCCAACTGCACGCTCGGGACGCTGGCGTATTGAGCTCTTCAT
CCGACCCGTCTT
dot-bracket secondary structure
..((((..((((.(((...((.((((......))))....((((((((.((((((((((((((.(...(.((((((.......)))))).)....).)))
)))))))))))......(((.((((((((((((((....)))))))).(((((....)))))...)))))))))..)))))))).......))...))).
)))).))))...
SIMILARITIES| miRBase no hits PMRD ppt-miR903: 6e-106 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
