ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1023
source: miRBase, original name: ppt-MIR1023a (MI0005960)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACACTCTCTCCATTTCTCTAC miRNA* AGAGAATTGGAGAGAGTGCAT mismatches: 3 bulges: 0 |
pre-miRNA
GGGAGCGATTGGACCACCTTGCAGTTTCATGGCACACTCTCTCCATTTCTCTACCGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGA
TCGATGGTCAGGAGTTGGAAGAGAATTGGAGAGAGTGCATTGTGAATTGCGGGGTTGACGAGGCGGAGGG
dot-bracket secondary structure
....((..(((..(.(((((((((((.((..(..(((((((((((.((((((.((((((..((..((((((((((((..(.(....).)..)))))))))
)))...))..)))..))).)))))).)))))))))))..)..))))))))))))).).))).))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GGGAGCGATTGGACCACCTTGCAGTTTCATGGCACACTCTCTCCATTTCTCTACCGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGA
TCGATGGTCAGGAGTTGGAAGAGAATTGGAGAGAGTGCATTGTGAATTGCGGGGTTGACGAGGCGGAGGG
dot-bracket secondary structure
....((..(((..(.(((((((((((.((..(..(((((((((((.((((((.((((((..((..((((((((((((..(.(....).)..)))))))))
)))...))..)))..))).)))))).)))))))))))..)..))))))))))))).).))).))......
SIMILARITIES| miRBase ppt-MIR1023a: 2e-93 PMRD no hits microPC no hits | UniProt no hits RFAM MIR1023: 1e-91 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
