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ABOUT THIS RECORD

ID: MNEST039573
species: Physcomitrella patens
miRNA family: MIR1023
source: miRBase, original name: ppt-MIR1023a (MI0005960)

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGAGAATTGGAGAGAGTGCAT

miRNA*
ACACTCTCTCCATTTCTCTAC

mismatches: 3
bulges: 0

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pre-miRNA
GGGAGCGATTGGACCACCTTGCAGTTTCATGGCACACTCTCTCCATTTCTCTACCGTTCATGCAGCGGTTGATCGATTGGGTTGCTGGTTGATTGATCGA
TCGATGGTCAGGAGTTGGAAGAGAATTGGAGAGAGTGCATTGTGAATTGCGGGGTTGACGAGGCGGAGGG


dot-bracket secondary structure
....((..(((..(.(((((((((((.((..(..(((((((((((.((((((.((((((..((..((((((((((((..(.(....).)..)))))))))
)))...))..)))..))).)))))).)))))))))))..)..))))))))))))).).))).))......



SIMILARITIES
miRBase ppt-MIR1023a: 2e-93

PMRD no hits

microPC no hits
UniProt no hits

RFAM MIR1023: 1e-91

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence

references

[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"




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