ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1023
source: miRBase, original name: ppt-MIR1023c (MI0005962)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGGAATCGGAAAGAGTGTAC miRNA* CCACTCTCTCCGTTTCCCTTC mismatches: 3 bulges: 0 |
pre-miRNA
GCGCAGTTACACAGCTTGCATTTCGGTGTCCACTCTCTCCGTTTCCCTTCCCATGATGGCTAGCCTTGAGTAAGTACATATGTTTTGAACACATGTATGC
TTGCTTAAAATCCTTTGTCGGAGGGAATCGGAAAGAGTGTACAATGAATTGCAAGCTTGATTGATTCG
dot-bracket secondary structure
...((((((...((((((((.((((.(((.((((((.((((.((((((.((.(..(.((......(((((((((((.((((((.......)))))).)))
))))))))...)).)..).)))))))).)))).)))))).))).)))).)))))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GCGCAGTTACACAGCTTGCATTTCGGTGTCCACTCTCTCCGTTTCCCTTCCCATGATGGCTAGCCTTGAGTAAGTACATATGTTTTGAACACATGTATGC
TTGCTTAAAATCCTTTGTCGGAGGGAATCGGAAAGAGTGTACAATGAATTGCAAGCTTGATTGATTCG
dot-bracket secondary structure
...((((((...((((((((.((((.(((.((((((.((((.((((((.((.(..(.((......(((((((((((.((((((.......)))))).)))
))))))))...)).)..).)))))))).)))).)))))).))).)))).)))))))))))))).....
SIMILARITIES| miRBase ppt-MIR1023c: 2e-92 PMRD no hits microPC no hits | UniProt no hits RFAM MIR1023: 5e-91 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
