ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1023
source: miRBase, original name: ppt-MIR1023d (MI0005963)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCACTCTCTCCGTTTCCCTTCC miRNA* AAGGGAAATGGAGAGAGTGTAT mismatches: 1 bulges: 0 |
pre-miRNA
TGTAGAAGATGCAGCTTGCAGATTATCATCCACTCTCTCCGTTTCCCTTCCCACAGCTATCATCCGGACTAGCATTTCCTGTACATACTAGGGAAGGGAA
ATGGAGAGAGTGTATAATGAATTGCATGCTTGATTGCTGAG
dot-bracket secondary structure
..(((..(((..(((.(((((.((((.((.((((((((((((((((((((((...((((((.....)).)))).......((....))..))))))))))
)))))))))))).)).)))).))))).)))..))).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
TGTAGAAGATGCAGCTTGCAGATTATCATCCACTCTCTCCGTTTCCCTTCCCACAGCTATCATCCGGACTAGCATTTCCTGTACATACTAGGGAAGGGAA
ATGGAGAGAGTGTATAATGAATTGCATGCTTGATTGCTGAG
dot-bracket secondary structure
..(((..(((..(((.(((((.((((.((.((((((((((((((((((((((...((((((.....)).)))).......((....))..))))))))))
)))))))))))).)).)))).))))).)))..))).)))..
SIMILARITIES| miRBase ppt-MIR1023c: 0.0000004 PMRD no hits microPC no hits | UniProt no hits RFAM MIR1023: 5e-75 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
