ABOUT THIS RECORDspecies: Physcomitrella patens
source: miRBase, original name: ppt-MIR1023e (MI0010538)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACACTCTCTCCGTTTCCCTTC miRNA* AGGGAATCGGGTGGAGTGCAT mismatches: 4 bulges: 0 |
pre-miRNA
ACAGCTTTGAATGTCATCATACACTCTCTCCGTTTCCCTTCCGAATCGTTTTTCCCCTCATGCACTGGAAACTGTTGGAAGGGAATCGGGTGGAGTGCAT
CATGATCTGCAAGCTCCGAC
dot-bracket secondary structure
..(((((.(...(((((.((.((((((..(((.(((((((((((......(((((...........)))))...))))))))))).)))..)))))).))
.)))))...)))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ, PLoS Genet. 4:e1000314(2008)., "Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development"
ACAGCTTTGAATGTCATCATACACTCTCTCCGTTTCCCTTCCGAATCGTTTTTCCCCTCATGCACTGGAAACTGTTGGAAGGGAATCGGGTGGAGTGCAT
CATGATCTGCAAGCTCCGAC
dot-bracket secondary structure
..(((((.(...(((((.((.((((((..(((.(((((((((((......(((((...........)))))...))))))))))).)))..)))))).))
.)))))...)))))).....
SIMILARITIES| miRBase ppt-MIR1023e: 8e-64 PMRD no hits microPC no hits | UniProt no hits RFAM MIR1023: 1e-62 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ, PLoS Genet. 4:e1000314(2008)., "Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development"
