ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1024
source: miRBase, original name: ppt-MIR1024b (MI0005965)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTGGTTGGATTGTAGGCCTC miRNA* CGCCTTGCAATTCAAGCAGACT mismatches: 2 bulges: 1 |
pre-miRNA
GTAGACGCCTTGCAATTCAAGCAGACTCTATTATGCGGCTGCCGCGGACACTACGTGGTTTGTTGTGCTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAA
ACTTCATGACCATCGCAACTACTG
dot-bracket secondary structure
(..((.((((.(((((((((.((((((.......(((((.((((((.......))))))..))))).....)))))).))))))))))))).))..)...
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SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GTAGACGCCTTGCAATTCAAGCAGACTCTATTATGCGGCTGCCGCGGACACTACGTGGTTTGTTGTGCTTCAGTCTGGTTGGATTGTAGGCCTCCGCAAA
ACTTCATGACCATCGCAACTACTG
dot-bracket secondary structure
(..((.((((.(((((((((.((((((.......(((((.((((((.......))))))..))))).....)))))).))))))))))))).))..)...
........................
SIMILARITIES| miRBase ppt-MIR1024a: 0.000000000000007 PMRD ppt-miR1024b: 3e-66 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR1024b from PMRD (MNEST051451) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
