ABOUT THIS RECORDspecies: Physcomitrella patens
source: miRBase, original name: ppt-MIR1025 (MI0005966)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCACAACAAAGCTAATAAC miRNA* TTTTAGTTTTGTTGTGGGCTGT mismatches: 2 bulges: 1 |
pre-miRNA
GTTCCGGTGCAAGGTCGTGTTGAGGAGTCGTGTTTTTAGTTTTGTTGTGGGCTGTAAGGGTGGCTGCGGGAGAAATTATTATCATTCTGCGGGATGTCCT
CTACCCACTCCGCCTTCCCTGTCTGTTGTCGAGTGGGGGTCTCGCCTGCTCCTTCCTTCTGCCACAACAAAGCTAATAACTCGACTCATCCTGACACCAC
GTCTCTGGCT
dot-bracket secondary structure
...((((.(..(.((.(((((((.((((((.(((.(((((((((((((((.(.(.(((((.((..(((((.((.........(((((....)))))....
...(((((((.((..............)).)))))))....)).))))).)).)))))).)))))))))))))))).))).)))))).))..))))).))
.)).))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GTTCCGGTGCAAGGTCGTGTTGAGGAGTCGTGTTTTTAGTTTTGTTGTGGGCTGTAAGGGTGGCTGCGGGAGAAATTATTATCATTCTGCGGGATGTCCT
CTACCCACTCCGCCTTCCCTGTCTGTTGTCGAGTGGGGGTCTCGCCTGCTCCTTCCTTCTGCCACAACAAAGCTAATAACTCGACTCATCCTGACACCAC
GTCTCTGGCT
dot-bracket secondary structure
...((((.(..(.((.(((((((.((((((.(((.(((((((((((((((.(.(.(((((.((..(((((.((.........(((((....)))))....
...(((((((.((..............)).)))))))....)).))))).)).)))))).)))))))))))))))).))).)))))).))..))))).))
.)).))))..
SIMILARITIES| miRBase no hits PMRD ppt-miR1025: 3e-117 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR1025 from PMRD (MNEST051452) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
