ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1026
source: miRBase, original name: ppt-MIR1026b (MI0005968)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGAAAGACTTGAGAGGACA miRNA* TTCTCTCTAGTCTTTCTTGGA mismatches: 4 bulges: 0 |
pre-miRNA
CAGGAACATAATTGAGACTCTCTGAACTCTGAGAAAGACTTGAGAGGACACTCCTGCAACAACTGTGGCAATTCCATGCAGTTATAGCAGCATCTGCAGC
GGCGGTTCTCTCTAGTCTTTCTTGGACTTTGGATGGCTTCTTCTGCAACATC
dot-bracket secondary structure
(((((........((..((.((..((.((..(((((((((.((((((((....((((...((((((((.....))..))))))...((((...)))).))
))..)))))))).)))))))))..)).))..)).))..))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
CAGGAACATAATTGAGACTCTCTGAACTCTGAGAAAGACTTGAGAGGACACTCCTGCAACAACTGTGGCAATTCCATGCAGTTATAGCAGCATCTGCAGC
GGCGGTTCTCTCTAGTCTTTCTTGGACTTTGGATGGCTTCTTCTGCAACATC
dot-bracket secondary structure
(((((........((..((.((..((.((..(((((((((.((((((((....((((...((((((((.....))..))))))...((((...)))).))
))..)))))))).)))))))))..)).))..)).))..))))))).......
SIMILARITIES| miRBase ppt-MIR1026a: 0.000000008 PMRD ppt-miR1026b: 8e-83 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR1026b from PMRD (MNEST051454) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
