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ABOUT THIS RECORD
ID:
MNEST039590
species:
Physcomitrella patens
source:
miRBase, original name:
ppt-MIR1028b
(
MI0005972
)
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTTAGATCTACAATGCCACC
miRNA*
CGGCATTGTGGACCTAAGACC
mismatches:
2
bulges:
0
View larger
pre-miRNA
CAAACAAGCAAATCCATTCTTGGACTAGT
TCTTAGATCTACAATGCCACC
TACAACAGCAATACTTAAGGTTATGAGAAGATATCTATCATGCTCTCTGG
AGTGTGGTCCTCTTCTTACAATCTTAAATTTTAAATTTCTTGAAAGG
CGGCATTGTGGACCTAAGACC
TTGGTCAAGTGTGGAATAAGGCTAAA
dot-bracket secondary structure
......(((...(((((.((((..(.((.
((((((.(((((((((((.((
(.............((((((((.((((((((.....(((((((((....)
))))))))..)))))))).))))))))..(((((.....))))))))
.))))))))))).)))))).)
).)..)))).))))).....)))...
SIMILARITIES
miRBase
ppt-MIR1028b
:
9e-108
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
deep sequencing data evidence
references
[
1
] Axtell MJ, Snyder JA, Bartel DP,
Plant Cell. 19:1750-1769(2007).
,
"Common functions for diverse small RNAs of land plants"