ABOUT THIS RECORDspecies: Physcomitrella patens
source: miRBase, original name: ppt-MIR1028b (MI0005972)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGCATTGTGGACCTAAGACC miRNA* TCTTAGATCTACAATGCCACC mismatches: 3 bulges: 0 |
pre-miRNA
CAAACAAGCAAATCCATTCTTGGACTAGTTCTTAGATCTACAATGCCACCTACAACAGCAATACTTAAGGTTATGAGAAGATATCTATCATGCTCTCTGG
AGTGTGGTCCTCTTCTTACAATCTTAAATTTTAAATTTCTTGAAAGGCGGCATTGTGGACCTAAGACCTTGGTCAAGTGTGGAATAAGGCTAAA
dot-bracket secondary structure
......(((...(((((.((((..(.((.((((((.(((((((((((.(((.............((((((((.((((((((.....(((((((((....)
))))))))..)))))))).))))))))..(((((.....)))))))).))))))))))).)))))).)).)..)))).))))).....)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
CAAACAAGCAAATCCATTCTTGGACTAGTTCTTAGATCTACAATGCCACCTACAACAGCAATACTTAAGGTTATGAGAAGATATCTATCATGCTCTCTGG
AGTGTGGTCCTCTTCTTACAATCTTAAATTTTAAATTTCTTGAAAGGCGGCATTGTGGACCTAAGACCTTGGTCAAGTGTGGAATAAGGCTAAA
dot-bracket secondary structure
......(((...(((((.((((..(.((.((((((.(((((((((((.(((.............((((((((.((((((((.....(((((((((....)
))))))))..)))))))).))))))))..(((((.....)))))))).))))))))))).)))))).)).)..)))).))))).....)))...
SIMILARITIES| miRBase ppt-MIR1028b: 9e-108 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
