ABOUT THIS RECORDspecies: Physcomitrella patens
source: miRBase, original name: ppt-MIR1028c (MI0005973)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCATTGTAGGTTTAAGAGC miRNA* TCTTAGATCTACAATGCCTCT mismatches: 1 bulges: 0 |
pre-miRNA
CGAAGACATGGAAGATTTCATCCGCGACCTTGCTCTTAGATCTACAATGCCTCTTGCGAAACTGACAGCGGAATACCGGACTTTTATTTGATCATGATGG
AATCCACATGTGCCTCATACTTCAGGAATCCATGCGGTCCACCATGTGGCATTGTAGGTTTAAGAGCTGTGCCGCGGGTGGATTGATGATCACCTGT
dot-bracket secondary structure
....(((((.((....((((((((((.(...((((((((((((((((((((.................(((....)))..............((((.(((
(..((.((((..(((........)))....)))).)))))).)))).))))))))))))))))))))...).)))))))))))).))).))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
CGAAGACATGGAAGATTTCATCCGCGACCTTGCTCTTAGATCTACAATGCCTCTTGCGAAACTGACAGCGGAATACCGGACTTTTATTTGATCATGATGG
AATCCACATGTGCCTCATACTTCAGGAATCCATGCGGTCCACCATGTGGCATTGTAGGTTTAAGAGCTGTGCCGCGGGTGGATTGATGATCACCTGT
dot-bracket secondary structure
....(((((.((....((((((((((.(...((((((((((((((((((((.................(((....)))..............((((.(((
(..((.((((..(((........)))....)))).)))))).)))).))))))))))))))))))))...).)))))))))))).))).))......
SIMILARITIES| miRBase ppt-MIR1028c: 1e-109 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
