ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1030
source: miRBase, original name: ppt-MIR1030d (MI0005978)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTGCATCTGCACCTGCACCA miRNA* GTGAGATGCAGATGCAGAGG mismatches: 1 bulges: 1 |
pre-miRNA
AGTCCTCCGCTCTGCTGCAATGTAATGTGTCTGCATCTGCACCTGCACCACGGTGTAACAGTGGCGACGCTTTTTCTTGCGGATATCAGGCACTCATGCC
GTTGCTTCCCTGCATTTTCCAATGTGGCGTTGGTGCAATCCGCAGACAATCAGTGTCTCTCACATTACGATGGTGAGATGCAGATGCAGAGGTGTTACAT
TGCAACTGACCCTCAATT
dot-bracket secondary structure
..........((.(.((((((((((..(.((((((((((((.((.(((((...(((((..((((.((((((((.(((.((((((.....(((((.(((((
(.(((......)))..........)))))).))))).))))))))).))..)))))).).))).))))).))))))).)))))))))))).)..))))))
)))).).)).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
AGTCCTCCGCTCTGCTGCAATGTAATGTGTCTGCATCTGCACCTGCACCACGGTGTAACAGTGGCGACGCTTTTTCTTGCGGATATCAGGCACTCATGCC
GTTGCTTCCCTGCATTTTCCAATGTGGCGTTGGTGCAATCCGCAGACAATCAGTGTCTCTCACATTACGATGGTGAGATGCAGATGCAGAGGTGTTACAT
TGCAACTGACCCTCAATT
dot-bracket secondary structure
..........((.(.((((((((((..(.((((((((((((.((.(((((...(((((..((((.((((((((.(((.((((((.....(((((.(((((
(.(((......)))..........)))))).))))).))))))))).))..)))))).).))).))))).))))))).)))))))))))).)..))))))
)))).).)).........
SIMILARITIES| miRBase ppt-MIR1030c: 0.00000001 PMRD ppt-miR1030d: 5e-122 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ppt-miR1030d from PMRD (MNEST051461) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
