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ABOUT THIS RECORD
ID:
MNEST039599
species:
Physcomitrella patens
miRNA family:
MIR1030
source:
miRBase, original name:
ppt-MIR1030e
(
MI0005979
)
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTGCATCTGCACCTGCACCA
miRNA*
GTGCAGTGCCTATGCAGACA
mismatches:
2
bulges:
1
View larger
pre-miRNA
GAAAATCCTTGAAGCTGCAACGCTACTTT
TCTGCATCTGCACCTGCACCA
AGATGCGATAACATGTACAGATGAACCAAATACACAGTTGTACTGTCATG
CCCAGTTAGCCACTGGACTTGATTTGTTGAACAATTATTTGTACTCGCTTTATCGCGTACTG
GTGCAGTGCCTATGCAGACA
TGTAGTGTTGTAGCTGGA
TGCAGATC
dot-bracket secondary structure
....((((....((((((((((((((...
(((((((..((((.(((((((
..(((((((((...((((((((((......((((....))))..((((.(
.(((((.....))))).).))))...........)))))))))).....)))))))))..))
)))))))))..)))))))..
.)))))))))))))))))
).......
SIMILARITIES
miRBase
ppt-MIR1030a
:
0.0000007
PMRD
ppt-miR1030e
:
4e-116
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ppt-miR1030e
from PMRD (
MNEST051462
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
deep sequencing data evidence
references
[
1
] Axtell MJ, Snyder JA, Bartel DP,
Plant Cell. 19:1750-1769(2007).
,
"Common functions for diverse small RNAs of land plants"