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ABOUT THIS RECORD

ID: MNEST039601
species: Physcomitrella patens
miRNA family: MIR1030
source: miRBase, original name: ppt-MIR1030g (MI0005981)

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTGCATCTGCACCTGCACCA

miRNA*
 GTGCGGGTTCTTATGCAGAAC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 CCCCTGCATTACTGCTTCAATGCCACGTATCTGCATCTGCACCTGCACCAAAGTTTCGAAATGCTAAGCTCTAATGTGAATGATGACACTTTTTTTGTAC
CCAAAGTGGGCATGAAGCTGTGTGTTCTGCTTGGTGATCGTTTCACAGTTACGACTCGATGGTGCGGGTTCTTATGCAGAACCGTGGCATTGGAGCAATC
CCTTTTAA

dot-bracket secondary structure
............(((((((((((((((..(((((((..(.((((((((((.....((((...(((((((((......))..((..((((...(((..(.(
((.....))).)..)))..))))..)).)))))))..((((.........)))).)))))))))))))).)..)))))))..)))))))))))))))...
........


SIMILARITIES
miRBase ppt-MIR1030f: 0.000000000000003

PMRD ppt-miR1030g: 1e-103

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence

references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"



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